ProteoModlR for quantitative proteomics pathway modeling
To enable quantitative analysis of post-translational protein modifications, Paolo Cifani and Mojdeh Shakiba in the lab developed ProteoModlR, a R program for quantitative analysis of relative and absolute abundance and stoichiometries of post-translational chemical modifications across temporal and steady-state biological states.
ProteoModlR and its documentation can be downloaded from http://github.com/kentsisresearchgroup/ProteoModlR and can also be used as an external tool in Skyline.